HL_5F8K_083

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_083 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3053

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5F8K|1|1a|G|521
5F8K|1|1a|C|522
5F8K|1|1a|A|523
5F8K|1|1a|G|524
5F8K|1|1a|C|525
5F8K|1|1a|C|526
5F8K|1|1a|7MG|527
5F8K|1|1a|C|528

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12