HL_5F8K_099

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_099 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0799

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5F8K|1|1a|C|1314
5F8K|1|1a|U|1315
5F8K|1|1a|G|1316
5F8K|1|1a|C|1317
5F8K|1|1a|A|1318
5F8K|1|1a|A|1319
5F8K|1|1a|C|1320
5F8K|1|1a|C|1321
5F8K|1|1a|C|1322
5F8K|1|1a|G|1323

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1n

30S ribosomal protein S14 type Z

Chain 1s

30S ribosomal protein S19