HL_5F8K_135

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5F8K|1|2A|A|1067, 5F8K|1|2A|G|1068, 5F8K|1|2A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|C|1064
5F8K|1|2A|U|1065
5F8K|1|2A|U|1066
5F8K|1|2A|A|1067
5F8K|1|2A|G|1068
5F8K|1|2A|A|1069
5F8K|1|2A|A|1070
5F8K|1|2A|G|1071
5F8K|1|2A|C|1072
5F8K|1|2A|A|1073
5F8K|1|2A|G|1074

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25