HL_5F8K_136

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

5F8K|1|2A|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_136 not in the Motif Atlas

Homologous match to HL_8VTW_029

Geometric discrepancy: 0.5943

The information below is about HL_8VTW_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|G|1091
5F8K|1|2A|C|1092
5F8K|1|2A|G|1093
5F8K|1|2A|U|1094
5F8K|1|2A|A|1095
5F8K|1|2A|A|1096
5F8K|1|2A|U|1097
5F8K|1|2A|A|1098
5F8K|1|2A|G|1099
5F8K|1|2A|C|1100

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36