HL_5F8K_154

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(OMC)G

Length

13 nucleotides

Bulged bases

5F8K|1|2A|A|1913, 5F8K|1|2A|C|1914, 5F8K|1|2A|A|1916

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_154 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.132

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|C|1909
5F8K|1|2A|G|1910
5F8K|1|2A|PSU|1911
5F8K|1|2A|A|1912
5F8K|1|2A|A|1913
5F8K|1|2A|C|1914
5F8K|1|2A|5MU|1915
5F8K|1|2A|A|1916
5F8K|1|2A|PSU|1917
5F8K|1|2A|A|1918
5F8K|1|2A|A|1919
5F8K|1|2A|OMC|1920
5F8K|1|2A|G|1921

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA