HL_5F8K_161

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_161 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1259

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5F8K|1|2A|G|2303
5F8K|1|2A|G|2304
5F8K|1|2A|A|2305
5F8K|1|2A|C|2306
5F8K|1|2A|G|2307
5F8K|1|2A|G|2308
5F8K|1|2A|A|2309
5F8K|1|2A|A|2310
5F8K|1|2A|A|2311
5F8K|1|2A|U|2312
5F8K|1|2A|C|2313

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5