HL_5F8K_222
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 5F8K|1|1A|A|1116
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5F8K_222 not in the Motif Atlas
- Homologous match to HL_9DFE_027
- Geometric discrepancy: 0.249
- The information below is about HL_9DFE_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5F8K|1|1A|C|1110
5F8K|1|1A|U|1111
5F8K|1|1A|U|1112
5F8K|1|1A|A|1113
5F8K|1|1A|G|1114
5F8K|1|1A|A|1115
5F8K|1|1A|A|1116
5F8K|1|1A|G|1117
5F8K|1|1A|C|1118
5F8K|1|1A|A|1119
5F8K|1|1A|G|1120
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
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