HL_5F9F_002

3D structure

PDB id

5F9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F9F_002 not in the Motif Atlas

Geometric match to HL_5F9F_003

Geometric discrepancy: 0.116

The information below is about HL_5F9F_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5F9F|1|D|A|10
5F9F|1|D|G|11
5F9F|1|D|U|12
5F9F|1|D|G|13
5F9F|1|D|A|14
5F9F|1|D|U|15

Current chains

Chain D

RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3')

Nearby chains

Chain C

Probable ATP-dependent RNA helicase DDX58