3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CCGUG
Length
5 nucleotides
Bulged bases
5FCI|1|1|C|1793, 5FCI|1|1|G|1794
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5FCI_040 not in the Motif Atlas
Homologous match to HL_8P9A_151
Geometric discrepancy: 0.1073
The information below is about HL_8P9A_151
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

5FCI|1|1|C|1792
5FCI|1|1|C|1793
5FCI|1|1|G|1794
5FCI|1|1|U|1795
5FCI|1|1|G|1796

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L2
60S ribosomal protein L2-A
Chain Q3
60S ribosomal protein L43-A

Coloring options:


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