HL_5FCI_047

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

5FCI|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_047 not in the Motif Atlas

Homologous match to HL_8P9A_158

Geometric discrepancy: 0.113

The information below is about HL_8P9A_158

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5FCI|1|1|A|2164
5FCI|1|1|G|2165
5FCI|1|1|A|2166
5FCI|1|1|A|2167
5FCI|1|1|A|2168
5FCI|1|1|G|2169
5FCI|1|1|U|2170

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain L8

60S ribosomal protein L8-A

Chain M5

60S ribosomal protein L15-A