HL_5FCI_066

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_066 not in the Motif Atlas

Homologous match to HL_8P9A_176

Geometric discrepancy: 0.0898

The information below is about HL_8P9A_176

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5FCI|1|1|C|3025
5FCI|1|1|G|3026
5FCI|1|1|A|3027
5FCI|1|1|G|3028
5FCI|1|1|A|3029
5FCI|1|1|G|3030

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L9

60S ribosomal protein L9-A

Chain Q0

Ubiquitin-60S ribosomal protein L40