HL_5FCI_117

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

5FCI|1|5|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_117 not in the Motif Atlas

Homologous match to HL_8P9A_114

Geometric discrepancy: 0.0816

The information below is about HL_8P9A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

5FCI|1|5|C|69
5FCI|1|5|A|70
5FCI|1|5|A|71
5FCI|1|5|C|72
5FCI|1|5|C|73
5FCI|1|5|G|74

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m3

60S ribosomal protein L13-A

Chain m5

60S ribosomal protein L15-A

Chain n8

60S ribosomal protein L28

Chain o6

60S ribosomal protein L36-A