HL_5FCI_148

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_148 not in the Motif Atlas

Homologous match to HL_8P9A_145

Geometric discrepancy: 0.0976

The information below is about HL_8P9A_145

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5FCI|1|5|G|1544
5FCI|1|5|A|1545
5FCI|1|5|A|1546
5FCI|1|5|G|1547
5FCI|1|5|C|1548
5FCI|1|5|U|1549

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m5

60S ribosomal protein L15-A

Chain o7

60S ribosomal protein L37-A