HL_5FCI_172

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_172 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.1579

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5FCI|1|5|A|2673
5FCI|1|5|A|2674
5FCI|1|5|C|2675
5FCI|1|5|A|2676
5FCI|1|5|G|2677
5FCI|1|5|A|2678
5FCI|1|5|A|2679
5FCI|1|5|A|2680
5FCI|1|5|U|2681

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m1

60S ribosomal protein L11-A

Chain sM

Suppressor protein STM1,Suppressor protein STM1