HL_5FCI_195

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5FCI|1|6|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_195 not in the Motif Atlas

Homologous match to HL_8P9A_197

Geometric discrepancy: 0.0739

The information below is about HL_8P9A_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5FCI|1|6|G|330
5FCI|1|6|A|331
5FCI|1|6|U|332
5FCI|1|6|A|333
5FCI|1|6|G|334
5FCI|1|6|U|335
5FCI|1|6|G|336
5FCI|1|6|G|337
5FCI|1|6|C|338

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain s8

40S ribosomal protein S8-A