HL_5FCI_200

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACAGGGCCCAUUCGGGUCUUGU

Length

22 nucleotides

Bulged bases

5FCI|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_200 not in the Motif Atlas

Homologous match to HL_8P9A_202

Geometric discrepancy: 0.2185

The information below is about HL_8P9A_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCI|1|6|A|483
5FCI|1|6|C|484
5FCI|1|6|A|485
5FCI|1|6|G|486
5FCI|1|6|G|487
5FCI|1|6|G|488
5FCI|1|6|C|489
5FCI|1|6|C|490
5FCI|1|6|C|491
5FCI|1|6|A|492
5FCI|1|6|U|493
5FCI|1|6|U|494
5FCI|1|6|C|495
5FCI|1|6|G|496
5FCI|1|6|G|497
5FCI|1|6|G|498
5FCI|1|6|U|499
5FCI|1|6|C|500
5FCI|1|6|U|501
5FCI|1|6|U|502
5FCI|1|6|G|503
5FCI|1|6|U|504

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A