HL_5FCI_213

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_213 not in the Motif Atlas

Homologous match to HL_8P9A_214

Geometric discrepancy: 0.0739

The information below is about HL_8P9A_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5FCI|1|6|C|1121
5FCI|1|6|G|1122
5FCI|1|6|C|1123
5FCI|1|6|A|1124
5FCI|1|6|A|1125
5FCI|1|6|G|1126

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain q1

60S ribosomal protein L41-A

Chain q3

60S ribosomal protein L43-A