HL_5FCI_218

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_218 not in the Motif Atlas

Homologous match to HL_8P9A_219

Geometric discrepancy: 0.272

The information below is about HL_8P9A_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38901.2

Basepair signature

cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

5FCI|1|6|C|1359
5FCI|1|6|A|1360
5FCI|1|6|U|1361
5FCI|1|6|U|1362
5FCI|1|6|U|1363
5FCI|1|6|G|1364

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A

Chain s5

40S ribosomal protein S5