HL_5FCI_229

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5FCI|1|8|U|125, 5FCI|1|8|U|127, 5FCI|1|8|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_229 not in the Motif Atlas

Homologous match to HL_8P4V_075

Geometric discrepancy: 0.2717

The information below is about HL_8P4V_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5FCI|1|8|G|124
5FCI|1|8|U|125
5FCI|1|8|A|126
5FCI|1|8|U|127
5FCI|1|8|U|128
5FCI|1|8|C|129

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA