HL_5FCI_235

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5FCI|1|2|U|1057, 5FCI|1|2|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_235 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.5358

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5FCI|1|2|U|1055
5FCI|1|2|U|1056
5FCI|1|2|U|1057
5FCI|1|2|U|1058
5FCI|1|2|U|1059
5FCI|1|2|U|1060
5FCI|1|2|A|1061
5FCI|1|2|A|1062
5FCI|1|2|U|1063
5FCI|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D7

40S ribosomal protein S27-A

Chain S1

40S ribosomal protein S1-A