HL_5FCJ_037

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

5FCJ|1|1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_037 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.1114

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5FCJ|1|1|G|1680
5FCJ|1|1|U|1681
5FCJ|1|1|U|1682
5FCJ|1|1|A|1683
5FCJ|1|1|U|1684
5FCJ|1|1|C|1685
5FCJ|1|1|U|1686
5FCJ|1|1|U|1687
5FCJ|1|1|U|1688

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain N2

60S ribosomal protein L22-A