HL_5FCJ_051

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5FCJ|1|1|A|2372, 5FCJ|1|1|A|2373, 5FCJ|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_051 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0768

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

5FCJ|1|1|G|2369
5FCJ|1|1|G|2370
5FCJ|1|1|G|2371
5FCJ|1|1|A|2372
5FCJ|1|1|A|2373
5FCJ|1|1|C|2374
5FCJ|1|1|G|2375
5FCJ|1|1|G|2376
5FCJ|1|1|G|2377
5FCJ|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain O2

60S ribosomal protein L32