HL_5FCJ_096

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_096 not in the Motif Atlas

Homologous match to HL_8P9A_213

Geometric discrepancy: 0.1268

The information below is about HL_8P9A_213

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5FCJ|1|2|A|1084
5FCJ|1|2|G|1085
5FCJ|1|2|A|1086
5FCJ|1|2|A|1087
5FCJ|1|2|A|1088
5FCJ|1|2|U|1089

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D2

40S ribosomal protein S22-A

Chain D6

40S ribosomal protein S26-B

Chain S2

40S ribosomal protein S2