HL_5FCJ_198

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACAGGGCCCAUUCGGGUCUUGU

Length

22 nucleotides

Bulged bases

5FCJ|1|6|U|493, 5FCJ|1|6|U|494, 5FCJ|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_198 not in the Motif Atlas

Homologous match to HL_8P9A_202

Geometric discrepancy: 0.2185

The information below is about HL_8P9A_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCJ|1|6|A|483
5FCJ|1|6|C|484
5FCJ|1|6|A|485
5FCJ|1|6|G|486
5FCJ|1|6|G|487
5FCJ|1|6|G|488
5FCJ|1|6|C|489
5FCJ|1|6|C|490
5FCJ|1|6|C|491
5FCJ|1|6|A|492
5FCJ|1|6|U|493
5FCJ|1|6|U|494
5FCJ|1|6|C|495
5FCJ|1|6|G|496
5FCJ|1|6|G|497
5FCJ|1|6|G|498
5FCJ|1|6|U|499
5FCJ|1|6|C|500
5FCJ|1|6|U|501
5FCJ|1|6|U|502
5FCJ|1|6|G|503
5FCJ|1|6|U|504

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A