HL_5FCJ_201

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

5FCJ|1|6|G|660

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_201 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2617

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5FCJ|1|6|G|656
5FCJ|1|6|U|657
5FCJ|1|6|C|658
5FCJ|1|6|C|659
5FCJ|1|6|G|660
5FCJ|1|6|A|661
5FCJ|1|6|U|662
5FCJ|1|6|U|663
5FCJ|1|6|U|664
5FCJ|1|6|U|665
5FCJ|1|6|U|666
5FCJ|1|6|U|667
5FCJ|1|6|C|668
5FCJ|1|6|G|669
5FCJ|1|6|U|670
5FCJ|1|6|A|673
5FCJ|1|6|C|674

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A