HL_5FDU_017

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

5FDU|1|1A|C|597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73671.1

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

117

Unit IDs

5FDU|1|1A|U|589
5FDU|1|1A|A|590
5FDU|1|1A|U|591
5FDU|1|1A|U|592
5FDU|1|1A|G|593
5FDU|1|1A|A|594
5FDU|1|1A|A|595
5FDU|1|1A|G|596
5FDU|1|1A|C|597
5FDU|1|1A|A|598

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1P

50S ribosomal protein L15

Chain 1V

50S ribosomal protein L21