HL_5FDU_026

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

5FDU|1|1A|U|1003, 5FDU|1|1A|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30528.1

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

400

Unit IDs

5FDU|1|1A|C|1000
5FDU|1|1A|G|1001
5FDU|1|1A|A|1002
5FDU|1|1A|U|1003
5FDU|1|1A|A|1004
5FDU|1|1A|A|1005
5FDU|1|1A|C|1006
5FDU|1|1A|G|1007

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1Q

50S ribosomal protein L16