HL_5FDU_055

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41542.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

30

Unit IDs

5FDU|1|1A|C|2336
5FDU|1|1A|G|2337
5FDU|1|1A|C|2338
5FDU|1|1A|A|2339
5FDU|1|1A|A|2340
5FDU|1|1A|G|2341
5FDU|1|1A|G|2342
5FDU|1|1A|G|2343

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1G

50S ribosomal protein L5

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25