HL_5FDU_088

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

5FDU|1|1a|U|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_088 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.2486

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5FDU|1|1a|G|838
5FDU|1|1a|U|839
5FDU|1|1a|C|840
5FDU|1|1a|U|841
5FDU|1|1a|C|848

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2