HL_5FDU_115

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5FDU|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_115 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0564

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5FDU|1|2A|G|382
5FDU|1|2A|U|383
5FDU|1|2A|U|384
5FDU|1|2A|C|385
5FDU|1|2A|G|386
5FDU|1|2A|U|387
5FDU|1|2A|G|388
5FDU|1|2A|G|389
5FDU|1|2A|A|390
5FDU|1|2A|G|391
5FDU|1|2A|C|392

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15