HL_5FDU_131

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_131 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.066

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5FDU|1|2A|G|978
5FDU|1|2A|G|979
5FDU|1|2A|A|980
5FDU|1|2A|A|981
5FDU|1|2A|C|982
5FDU|1|2A|A|983
5FDU|1|2A|A|984
5FDU|1|2A|C|985

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 2U

50S ribosomal protein L20