HL_5FDU_132

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUGGCUUAGAAGCAGCCAUCC

Length

22 nucleotides

Bulged bases

5FDU|1|2A|G|1068, 5FDU|1|2A|C|1072

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|2A|G|1058
5FDU|1|2A|G|1059
5FDU|1|2A|U|1060
5FDU|1|2A|G|1062
5FDU|1|2A|G|1063
5FDU|1|2A|C|1064
5FDU|1|2A|U|1065
5FDU|1|2A|U|1066
5FDU|1|2A|A|1067
5FDU|1|2A|G|1068
5FDU|1|2A|A|1069
5FDU|1|2A|A|1070
5FDU|1|2A|G|1071
5FDU|1|2A|C|1072
5FDU|1|2A|A|1073
5FDU|1|2A|G|1074
5FDU|1|2A|C|1075
5FDU|1|2A|C|1076
5FDU|1|2A|A|1077
5FDU|1|2A|U|1078
5FDU|1|2A|C|1079
5FDU|1|2A|C|1080

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25