HL_5FDU_133

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGUGCGUAAUAGCUC

Length

16 nucleotides

Bulged bases

5FDU|1|2A|A|1088, 5FDU|1|2A|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|2A|G|1087
5FDU|1|2A|A|1088
5FDU|1|2A|G|1089
5FDU|1|2A|U|1090
5FDU|1|2A|G|1091
5FDU|1|2A|C|1092
5FDU|1|2A|G|1093
5FDU|1|2A|U|1094
5FDU|1|2A|A|1095
5FDU|1|2A|A|1096
5FDU|1|2A|U|1097
5FDU|1|2A|A|1098
5FDU|1|2A|G|1099
5FDU|1|2A|C|1100
5FDU|1|2A|U|1101
5FDU|1|2A|C|1102

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16