HL_5FDU_139

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5FDU|1|2A|U|1396, 5FDU|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_139 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0636

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5FDU|1|2A|G|1389
5FDU|1|2A|U|1390
5FDU|1|2A|U|1391
5FDU|1|2A|A|1392
5FDU|1|2A|A|1393
5FDU|1|2A|U|1394
5FDU|1|2A|A|1395
5FDU|1|2A|U|1396
5FDU|1|2A|U|1397
5FDU|1|2A|C|1398

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23