HL_5FDU_164
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUCCACAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDU_164 not in the Motif Atlas
- Homologous match to HL_7RQB_060
- Geometric discrepancy: 0.1409
- The information below is about HL_7RQB_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06192.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 14
Unit IDs
5FDU|1|2A|C|2471
5FDU|1|2A|G|2472
5FDU|1|2A|U|2473
5FDU|1|2A|C|2474
5FDU|1|2A|C|2475
5FDU|1|2A|A|2476
5FDU|1|2A|C|2477
5FDU|1|2A|A|2478
5FDU|1|2A|G|2479
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L36
- Chain 2H
- 50S ribosomal protein L6
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