HL_5FDU_205

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5FDU|1|2a|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_205 not in the Motif Atlas

Homologous match to HL_6CZR_102

Geometric discrepancy: 0.2005

The information below is about HL_6CZR_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52463.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5FDU|1|2a|C|1445
5FDU|1|2a|U|1446
5FDU|1|2a|A|1447
5FDU|1|2a|C|1452
5FDU|1|2a|G|1456
5FDU|1|2a|G|1457

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20