HL_5FDU_217

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDU_217 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.0905

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5FDU|1|2A|G|2304
5FDU|1|2A|A|2305
5FDU|1|2A|C|2306
5FDU|1|2A|G|2307
5FDU|1|2A|G|2308
5FDU|1|2A|A|2309
5FDU|1|2A|A|2310
5FDU|1|2A|A|2311
5FDU|1|2A|U|2312

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2G

50S ribosomal protein L5