HL_5FDV_002
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGUAGCGG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDV_002 not in the Motif Atlas
- Homologous match to HL_7RQB_002
- Geometric discrepancy: 0.057
- The information below is about HL_7RQB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96598.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 15
Unit IDs
5FDV|1|1A|C|86
5FDV|1|1A|G|87
5FDV|1|1A|G|88
5FDV|1|1A|U|89
5FDV|1|1A|A|90
5FDV|1|1A|G|91
5FDV|1|1A|C|92
5FDV|1|1A|G|93
5FDV|1|1A|G|94
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 1X
- 50S ribosomal protein L23
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: