HL_5FDV_058

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5FDV|1|1A|U|2418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0508

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5FDV|1|1A|C|2416
5FDV|1|1A|G|2417
5FDV|1|1A|U|2418
5FDV|1|1A|G|2419
5FDV|1|1A|U|2420
5FDV|1|1A|G|2421
5FDV|1|1A|G|2422
5FDV|1|1A|A|2423
5FDV|1|1A|A|2424
5FDV|1|1A|G|2425

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15