HL_5FDV_067
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAGACCAC
- Length
- 9 nucleotides
- Bulged bases
- 5FDV|1|1A|A|2830
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDV_067 not in the Motif Atlas
- Homologous match to HL_7RQB_068
- Geometric discrepancy: 0.049
- The information below is about HL_7RQB_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.1
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5FDV|1|1A|G|2829
5FDV|1|1A|A|2830
5FDV|1|1A|A|2831
5FDV|1|1A|G|2832
5FDV|1|1A|A|2833
5FDV|1|1A|C|2834
5FDV|1|1A|C|2835
5FDV|1|1A|A|2836
5FDV|1|1A|C|2837
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
- Chain 1T
- 50S ribosomal protein L19
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