HL_5FDV_073

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_073 not in the Motif Atlas

Homologous match to HL_6CZR_074

Geometric discrepancy: 0.185

The information below is about HL_6CZR_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5FDV|1|1a|G|158
5FDV|1|1a|G|159
5FDV|1|1a|A|160
5FDV|1|1a|A|161
5FDV|1|1a|A|162
5FDV|1|1a|C|163

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1T

50S ribosomal protein L19

Chain 1t

30S ribosomal protein S20