HL_5FDV_078
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDV_078 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.0863
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5FDV|1|1a|C|320
5FDV|1|1a|A|321
5FDV|1|1a|C|322
5FDV|1|1a|U|323
5FDV|1|1a|G|324
5FDV|1|1a|A|325
5FDV|1|1a|G|326
5FDV|1|1a|A|327
5FDV|1|1a|C|328
5FDV|1|1a|A|329
5FDV|1|1a|C|330
5FDV|1|1a|G|331
5FDV|1|1a|G|332
5FDV|1|1a|G|333
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
- Chain 1t
- 30S ribosomal protein S20
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