HL_5FDV_083
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAGCC(G7M)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDV_083 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.2599
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
5FDV|1|1a|G|521
5FDV|1|1a|C|522
5FDV|1|1a|A|523
5FDV|1|1a|G|524
5FDV|1|1a|C|525
5FDV|1|1a|C|526
5FDV|1|1a|G7M|527
5FDV|1|1a|C|528
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
Coloring options: