HL_5FDV_096

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

5FDV|1|1a|U|1136, 5FDV|1|1a|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_096 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.285

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|1a|G|1134
5FDV|1|1a|U|1135
5FDV|1|1a|U|1136
5FDV|1|1a|C|1137
5FDV|1|1a|G|1138
5FDV|1|1a|G|1139
5FDV|1|1a|C|1140

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains