HL_5FDV_105

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

5FDV|1|2A|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_105 not in the Motif Atlas

Homologous match to HL_7RQB_003

Geometric discrepancy: 0.0515

The information below is about HL_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

5FDV|1|2A|G|123
5FDV|1|2A|G|124
5FDV|1|2A|G|125
5FDV|1|2A|A|126
5FDV|1|2A|A|127
5FDV|1|2A|C|128

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23