HL_5FDV_116

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5FDV|1|2A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_116 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0682

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5FDV|1|2A|G|410
5FDV|1|2A|G|411
5FDV|1|2A|A|412
5FDV|1|2A|C|413
5FDV|1|2A|C|414
5FDV|1|2A|A|415
5FDV|1|2A|C|416
5FDV|1|2A|C|417

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2P

50S ribosomal protein L15