HL_5FDV_131

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUGGCUUAGAAGCAGCCAUCC

Length

22 nucleotides

Bulged bases

5FDV|1|2A|A|1067, 5FDV|1|2A|G|1068, 5FDV|1|2A|C|1072

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|2A|G|1058
5FDV|1|2A|G|1059
5FDV|1|2A|U|1060
5FDV|1|2A|G|1062
5FDV|1|2A|G|1063
5FDV|1|2A|C|1064
5FDV|1|2A|U|1065
5FDV|1|2A|U|1066
5FDV|1|2A|A|1067
5FDV|1|2A|G|1068
5FDV|1|2A|A|1069
5FDV|1|2A|A|1070
5FDV|1|2A|G|1071
5FDV|1|2A|C|1072
5FDV|1|2A|A|1073
5FDV|1|2A|G|1074
5FDV|1|2A|C|1075
5FDV|1|2A|C|1076
5FDV|1|2A|A|1077
5FDV|1|2A|U|1078
5FDV|1|2A|C|1079
5FDV|1|2A|C|1080

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25