HL_5FDV_138

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

5FDV|1|2A|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_138 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.0877

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5FDV|1|2A|C|1451
5FDV|1|2A|A|1452
5FDV|1|2A|U|1453
5FDV|1|2A|G|1455
5FDV|1|2A|G|1456
5FDV|1|2A|A|1457
5FDV|1|2A|C|1458
5FDV|1|2A|G|1459

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17