HL_5FDV_142

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5FDV|1|2A|A|1614, 5FDV|1|2A|A|1616, 5FDV|1|2A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_142 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0618

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5FDV|1|2A|C|1612
5FDV|1|2A|G|1613
5FDV|1|2A|A|1614
5FDV|1|2A|C|1615
5FDV|1|2A|A|1616
5FDV|1|2A|C|1617
5FDV|1|2A|A|1618
5FDV|1|2A|G|1619

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2W

50S ribosomal protein L22