HL_5FDV_153

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

5FDV|1|2A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_153 not in the Motif Atlas

Homologous match to HL_7RQB_051

Geometric discrepancy: 0.5997

The information below is about HL_7RQB_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|2A|C|2143
5FDV|1|2A|U|2144
5FDV|1|2A|C|2145
5FDV|1|2A|C|2146
5FDV|1|2A|G|2147
5FDV|1|2A|G|2148

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains